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Lesson 1 of 6Genetic Processes
Unit 3 · Lesson 1 of 6

DNA, Genes, Chromosomes and Mitosis

How DNA is organized from nucleotides to genes, chromosomes and the genome, the stages of the cell cycle and mitosis, why mitosis produces identical cells, and how to estimate the time spent in each phase from an onion root tip.

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Key things to remember

  1. 1Nucleotide = phosphate + deoxyribose + base; A pairs with T and G pairs with C.
  2. 2Gene: a DNA segment that codes for a protein. Chromosome: one DNA molecule with its proteins. Genome: all of an organism's DNA.
  3. 3Cell cycle: G1 (growth) → S (DNA replication) → G2 (preparation) → M (mitosis and cytokinesis).
  4. 4Mitosis: prophase, metaphase, anaphase, telophase (PMAT), then cytokinesis; it produces two diploid, genetically identical cells.
  5. 5Somatic cells divide by mitosis for growth and repair; germ cells undergo meiosis to make gametes.
  6. 6In a root-tip count, % of cells in a phase ≈ % of the cycle spent in that phase.

You began life as a single cell, a fertilized egg. Today your body holds tens of trillions of cells, and almost every one of them carries the same set of instructions as that first cell. A skin cell that heals a cut, a bone cell that lengthens your leg during a growth spurt, and a cell lining your gut that is replaced every few days were all made by the same process: mitosis, cell division that produces two genetically identical cells. Before you can see why mitosis copies information so faithfully, you need to know what that information is and how it is packaged. This lesson starts with DNA and builds up to whole chromosomes, then follows a cell through its life cycle.

From nucleotide to genome

DNA (deoxyribonucleic acid) is a long chain built from units called nucleotides. Each nucleotide has three parts: a phosphate group, a sugar called deoxyribose, and one of four nitrogenous bases: adenine (A), thymine (T), guanine (G) or cytosine (C). Two chains wind around each other to form a double helix, held together by pairs of bases: A always pairs with T, and G always pairs with C. This complementary base pairing is the key to copying: if you know one strand, you can rebuild the other. The order of bases is the code. A gene is a section of DNA whose base sequence carries the instructions for one protein (or a functional RNA), and proteins do most of the cell's work. DNA is wrapped around proteins called histones and coiled into chromosomes; each chromosome holds hundreds to thousands of genes. The complete set of DNA in an organism is its genome.

LevelWhat it isIn humans
NucleotidePhosphate + deoxyribose sugar + one base (A, T, G or C)About 3 billion base pairs in one set of chromosomes
GeneA segment of DNA that codes for a protein or functional RNAAbout 20 000 protein-coding genes
ChromosomeOne very long DNA molecule packaged with histone proteins46 in somatic cells (23 pairs); 23 in gametes
GenomeAll the DNA in one set of an organism's chromosomesStretched out, the DNA in one cell would be about 2 m long
The levels of genetic organization, from smallest to largest.
DNA: antiparallel strands joined by complementary base pairs5′3′3′5′5′ → 3′5′ → 3′ATGCCGTAGCATPPPPPPPPPPPPbackbones outside, bases inside≈ 2 nmOne nucleotideP5′3′–OHbasephosphatedeoxyribose(sugar)nitrogenous baseA, T, G or CPurines A, G: double ring (larger)Pyrimidines T, C: single ring (smaller)A–T: 2 hydrogen bondsG–C: 3 hydrogen bondsPurine + pyrimidine in every pair: constant width1 turn ≈ 10 bp ≈ 3.4 nm≈ 2 nm wide · ≈ 10 bp per turn
Fig 1The DNA double helix: a sugar-phosphate backbone on the outside and complementary base pairs (A with T, G with C) on the inside.

The cell cycle

The cell cycle is the sequence of events from one division to the next. Most of it is interphase, which is not a resting stage at all. In G1 (gap 1) the cell grows, makes proteins and does its normal job. In the S phase (synthesis) it replicates its DNA, so every chromosome becomes two identical sister chromatids joined at a centromere. In G2 it grows further, makes extra organelles and checks that replication went correctly. Only then does it enter the M phase: mitosis (division of the nucleus) followed by cytokinesis (division of the cytoplasm). Checkpoints between stages stop the cycle if DNA is damaged. Some cells, such as most mature neurons, leave the cycle and stop dividing (a state called G0). When checkpoints fail and cells divide without control, the result can be cancer.

The cell cycle and the stages of mitosisG₁SG₂Mone cellcycleINTERPHASEM phaseWHAT HAPPENS IN EACH STAGEG₁Growth: the cell enlarges, makes proteinsand organelles, and does its normal jobSSynthesis: DNA replicates, so eachchromosome becomes two sister chromatidsG₂More growth; the cell checks its DNAand makes what it needs to divideMMitosis divides the nucleus, thencytokinesis divides the cytoplasmM PHASE, IN ORDER1. ProphaseChromosomes condense;envelope breaks down2. MetaphaseChromosomes line upat the cell's equator3. AnaphaseSister chromatids arepulled to the poles4. TelophaseTwo nuclei re-form;furrow pinches in5. CytokinesisCytoplasm divides:two identical cells
Fig 2The cell cycle wheel (G1, S, G2, M) and the stages of mitosis: prophase, metaphase, anaphase and telophase, followed by cytokinesis.

The phases of mitosis

PhaseWhat happensHow to recognize it under a microscope
ProphaseChromatin coils into visible chromosomes (two sister chromatids each); the nuclear membrane breaks down; spindle fibres start to formThick, thread-like chromosomes inside a fading nucleus
MetaphaseSpindle fibres attach to each centromere and line the chromosomes up across the middle (equator) of the cellChromosomes in a single line across the centre
AnaphaseCentromeres split and sister chromatids are pulled to opposite poles; each is now a separate chromosomeTwo V-shaped groups moving apart
TelophaseChromosomes reach the poles and uncoil; a nuclear membrane forms around each setTwo nuclei at opposite ends of one elongated cell
CytokinesisThe cytoplasm divides: animal cells pinch in with a furrow; plant cells build a cell plate that becomes a new wallTwo separate daughter cells
Mitosis is continuous, but biologists name four phases. Cytokinesis usually overlaps with telophase.

Why are the two daughter cells identical? Because the S phase makes an exact copy of every chromosome, and anaphase hands one chromatid of each chromosome to each new cell. A human cell entering mitosis has 46 chromosomes made of 92 chromatids; each daughter receives 46 chromosomes, the same set the parent started with. Mitosis happens in somatic cells (body cells), where it is used for growth, repairing tissue and replacing worn-out cells; some organisms also use it for asexual reproduction. Germ cells, the cells in the ovaries and testes that give rise to eggs and sperm, use a different division, meiosis, which halves the chromosome number and mixes alleles. That is the subject of the next lesson.

Observing mitosis: the onion root tip

Most cells in a mature plant are not dividing, but the tip of a growing root contains a meristem, a zone of rapid division. Onion root tips are a classic specimen: the tip is softened in acid, squashed flat on a slide and stained so that chromosomes show up dark. Every cell is frozen at whatever stage it was in at that moment. That is useful: if a cell spends a long time in one phase, many cells will be caught in that phase. So the percentage of cells in a phase estimates the percentage of the cycle's time spent in it. Biologists count at least 100 to 200 cells, ideally from several fields of view, to get a reliable estimate. Interphase cells always dominate the count, because interphase takes most of the cycle.

Estimating the time a cell spends in each phase from a single microscope count.
Counting tips
Count only whole cells, and decide in advance how to score borderline cells (for example, call it anaphase only once the two groups of chromosomes have visibly separated). Any cell with an intact nucleus and no visible chromosomes is in interphase. Always check that your phase counts add up to your total.

Worked examples

Reveal one step at a time and try to beat it to the next line.

Example 1
One strand of a DNA segment reads 5′-ATGCCTAG-3′. Write the complementary strand and state how many G–C pairs the segment contains.
Example 2
An onion cell (2n = 16) goes through one round of the cell cycle. How many chromosomes and chromatids does it have in G1, after the S phase, at metaphase, and in each daughter cell?
Example 3
A student counts 200 onion root-tip cells: 160 interphase, 20 prophase, 8 metaphase, 4 anaphase and 8 telophase. The cell cycle in these cells takes 24 hours. What percentage of cells are in mitosis, and about how long does metaphase last?
Example 4
Explain why a skin cell produced by mitosis carries exactly the same genes as the cell it came from.

Where marks get lost

  • Calling interphase a resting phase. The cell is growing, working and replicating its DNA during interphase.
  • Counting chromatids as chromosomes. After the S phase a human cell still has 46 chromosomes; each just has two sister chromatids (92 chromatids).
  • Thinking DNA replicates during mitosis. Replication happens in the S phase of interphase, before mitosis begins.
  • Mixing up the order of the middle phases. Chromosomes line up in metaphase (middle) and separate in anaphase (apart).
  • Saying mitosis halves the chromosome number. Mitosis keeps the number the same; only meiosis halves it.

Flashcards 9

Nucleotide
Complementary base pairing
Gene
Genome
+ 5 more

Practice

1
Arrange the levels of genetic organization from smallest to largest.
  1. 1Gene
  2. 2Genome
  3. 3Chromosome
  4. 4Nucleotide
2
Put these events in the order they occur, starting with a newly formed cell.
  1. 1Metaphase: chromosomes line up at the equator
  2. 2Telophase: two nuclei form
  3. 3Anaphase: sister chromatids separate
  4. 4G1: the cell grows
  5. 5S: DNA replicates
  6. 6G2: the cell prepares to divide
  7. 7Prophase: chromosomes condense
3
During which stage does DNA replication take place?
4
A cell has its chromosomes lined up in a single row across its middle. Which phase is it in?
5
Which base pairs with guanine in DNA?
6
In an onion root-tip count, 36 of 240 cells are in prophase. What percentage of the cells are in prophase? Give your answer to the nearest whole number.
%
7
A cell cycle lasts 20 hours. In a count of 150 cells, 6 are in anaphase. Estimate how long anaphase lasts, in minutes. Round to the nearest whole minute.
min
8
A fruit fly cell has 2n = 8. How many chromatids are present in the cell at metaphase of mitosis? Give a whole number.
9
Match each term to its description.
Centromere
Spindle fibres
Cell plate
Meristem
Germ cell
10
Why are the two cells produced by mitosis genetically identical?
11
What is the name for the division of the cytoplasm that follows mitosis?

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